Parrish Neuroimaging Group
  • Team
    • Todd Parrish, PhD
    • Jennie Yufen Chen, PhD
    • Xue Wang, PhD
    • Kenneth Weber, DC, PhD
    • Xiaowei Song
    • Ellen Fitzmorris, B.S.
    • Suvarna Badhe
    • Brian Williams, BSN, RN
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Home» fMRI pre-processing intermediate files (201308, Xiaowei Song)

fMRI pre-processing intermediate files (201308, Xiaowei Song)

DICOM -> NIFTI: raw.nii

Slice-timing: 3dTshift.nii

1st 5/dummy time-points discarding and RPI oriention: func.nii

Registration to the middle time-point: 3dvolreg.nii

subject’s ANAT head (with skull) registered to EPI data: head2func.nii

csf/wm in functional space: csf2func.nii  wm2func.nii

Bandpass and nuance variables regressing in functional original space: ofunc.nii

Scrubbing: sofunc.nii

Linear registration to template: lfunc.nii

Non-linear registration to template: nlfunc.nii

ReHo 27 neighbouts calculation: reho.nii

One pdf  as the steps’ description and QC control.



(c) 2014 Parrish Neuroimaging Group